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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032075 through 18771 annotations produced 1 hits



Tetraspanin 29Fb (Tsp29Fb):

Annotation Number : CG9496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032075
Gbrowse : chr2L:8937389-8939746 (+) // 100.0 //
Probeset : 1629358_s_at
Accessions : protein= NP_001137809; /// NP_523516; /// NP_723426;, nucleotide= NM_001144337; /// NM_078792; /// NM_164838;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0032075.
Homophila reports that CG9496 is a close match (8e-24) to human gene A15;MRX58;MXS1;TM4SF2 (NP_004606), a gene associated with Mental retardation, X-linked 58, 300210 (3).
TRiP has 1 RNAi stocks for FBgn0032075 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 10 of 4 0.00Down
Head394 ± 194 of 4 0.50Down
Eye326 ± 234 of 4 0.43Down
Thoracicoabdominal ganglion24 ± 40 of 4 0.00Down
Salivary gland4736 ± 1254 of 4 6.21Up
Crop1688 ± 304 of 4 2.20Up
Midgut4095 ± 454 of 4 5.40Up
Tubule5151 ± 644 of 4 6.80Up
Hindgut2682 ± 884 of 4 3.50Up
Heart37 ± 24 of 4 0.05Down
Fat body67 ± 234 of 4 0.09Down
Ovary14 ± 11 of 4 0.00Down
Testis67 ± 14 of 4 0.10Down
Male accessory glands2262 ± 1424 of 4 3.00Up
Virgin spermatheca633 ± 74 of 4 0.83None
Mated spermatheca698 ± 784 of 4 0.92None
Adult carcass262 ± 144 of 4 0.30Down
Larval CNS2 ± 30 of 4 0.00Down
Larval Salivary gland1062 ± 264 of 4 1.39Up
Larval midgut4126 ± 1964 of 4 5.41Up
Larval tubule4321 ± 814 of 4 5.70Up
Larval hindgut2021 ± 1104 of 4 2.65Up
Larval fat body37 ± 61 of 4 0.00Down
Larval trachea67 ± 124 of 4 0.09Down
Larval carcass5 ± 10 of 4 0.01Down
S2 cells (growing)3 ± 10 of 4 0.00Down
Whole fly762 ± 684 of 4

Looking for FBgn0032075. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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