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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032079 through 18771 annotations produced 1 hits


Annotation Number : CG31886
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032079
Gbrowse : chr2L:8953480-8958106 (-) // 100.0 //
Probeset : 1631610_at
Accessions : protein= NP_001097129; /// NP_609259;, nucleotide= NM_001103659; /// NM_135415;
FlyMine data for FBgn0032079.
BioGrid reports that CG31886 interacts with CG3702 .
TRiP has 1 RNAi stocks for FBgn0032079 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032079 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 24 of 4 0.50Down
Head58 14 of 4 0.80None
Eye30 64 of 4 0.41Down
Thoracicoabdominal ganglion28 24 of 4 0.40Down
Salivary gland79 114 of 4 1.07None
Crop40 44 of 4 0.50Down
Midgut102 74 of 4 1.40Up
Tubule920 204 of 412.30Up
Hindgut407 114 of 4 5.50Up
Heart164 124 of 4 2.21Up
Fat body523 424 of 4 7.01Up
Ovary76 24 of 4 1.00None
Testis12 12 of 4 0.20Down
Male accessory glands46 14 of 4 0.60Down
Virgin spermatheca433 304 of 4 5.80Up
Mated spermatheca454 424 of 4 6.08Up
Adult carcass161 154 of 4 2.20Up
Larval CNS33 34 of 4 0.45Down
Larval Salivary gland13 22 of 4 0.18Down
Larval midgut102 44 of 4 1.37Up
Larval tubule297 94 of 4 4.00Up
Larval hindgut636 354 of 4 8.52Up
Larval fat body6 20 of 4 0.10Down
Larval trachea8 21 of 4 0.11Down
Larval carcass20 33 of 4 0.27Down
S2 cells (growing)289 54 of 4 3.88Up
Whole fly74 74 of 4

Looking for FBgn0032079. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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