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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032082 through 18771 annotations produced 1 hits


Annotation Number : CG18088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032082
Gbrowse : chr2L:8967536-8970264 (+) // 100.0 //
Probeset : 1638462_at
Accessions : protein= NP_609262;, nucleotide= NM_135418;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0032082.
BDGP gene expression has embryonic in situ data for CG18088: 15 pix of staining in 2 body parts.
BioGrid reports that CG18088 interacts with CG4963 CG6510 CG7808 .
VDRC has 3 RNAi stocks for FBgn0032082 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head2 00 of 4 0.20Down
Eye4 00 of 4 0.25Down
Thoracicoabdominal ganglion4 10 of 4 0.20Down
Salivary gland453 314 of 426.86Up
Crop20 53 of 4 1.20None
Midgut19 14 of 4 1.20None
Tubule1 00 of 4 0.10Down
Hindgut1 10 of 4 0.10Down
Heart1 10 of 4 0.11Down
Fat body2 20 of 4 0.15Down
Ovary32 54 of 4 1.90None
Testis2 11 of 4 0.20Down
Male accessory glands55 84 of 4 3.30Up
Virgin spermatheca37 74 of 4 2.24None
Mated spermatheca54 84 of 4 3.25Up
Adult carcass2 00 of 4 0.10Down
Larval CNS0 00 of 4 0.03Down
Larval Salivary gland1 00 of 4 0.07Down
Larval midgut53 54 of 4 3.16Up
Larval tubule1 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.10Down
Larval fat body6 31 of 4 0.40None
Larval trachea2 10 of 4 0.12Down
Larval carcass0 00 of 4 0.03Down
S2 cells (growing)126 64 of 4 7.50Up
Whole fly16 24 of 4

Looking for FBgn0032082. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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