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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032084 through 18771 annotations produced 1 hits



(CG13101):

Annotation Number : CG13101
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032084
Gbrowse : chr2L:8977881-8984870 (-) // 100.0 //
Probeset : 1636168_s_at
Accessions : protein= NP_609264; /// NP_723433;, nucleotide= NM_135420; /// NM_164841;
FlyMine data for FBgn0032084.
VDRC has 2 RNAi stocks for FBgn0032084 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 01 of 4 0.10Down
Head85 94 of 4 1.30None
Eye53 64 of 4 0.82None
Thoracicoabdominal ganglion6 12 of 4 0.10Down
Salivary gland43 34 of 4 0.66Down
Crop425 144 of 4 6.50Up
Midgut31 14 of 4 0.50Down
Tubule312 194 of 4 4.80Up
Hindgut108 44 of 4 1.70Up
Heart14 24 of 4 0.22Down
Fat body23 04 of 4 0.36Down
Ovary92 64 of 4 1.40Up
Testis51 44 of 4 0.80Down
Male accessory glands59 54 of 4 0.90None
Virgin spermatheca66 24 of 4 1.02None
Mated spermatheca82 74 of 4 1.25None
Adult carcass111 44 of 4 1.70Up
Larval CNS11 24 of 4 0.17Down
Larval Salivary gland110 134 of 4 1.69Up
Larval midgut81 54 of 4 1.25None
Larval tubule104 134 of 4 1.60None
Larval hindgut110 44 of 4 1.70Up
Larval fat body13 24 of 4 0.20Down
Larval trachea245 314 of 4 3.75Up
Larval carcass25 24 of 4 0.38Down
S2 cells (growing)9 04 of 4 0.15Down
Whole fly65 14 of 4

Looking for FBgn0032084. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime