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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032085 through 18771 annotations produced 1 hits


Annotation Number : CG9555
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032085
Gbrowse : chr2L:8992062-8993310 (+) // 100.0 //
Probeset : 1641535_at
Accessions : protein= NP_001137810; /// NP_609265;, nucleotide= NM_001144338; /// NM_135421;
FlyMine data for FBgn0032085.
VDRC has 1 RNAi stocks for FBgn0032085 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head3 10 of 4 0.40None
Eye2 10 of 4 0.26Down
Thoracicoabdominal ganglion2 00 of 4 0.30Down
Salivary gland2 10 of 4 0.35Down
Crop1 00 of 4 0.20Down
Midgut116 44 of 415.10Up
Tubule3 00 of 4 0.50Down
Hindgut18 14 of 4 2.40Up
Heart2 00 of 4 0.38Down
Fat body2 10 of 4 0.32Down
Ovary1 00 of 4 0.10Down
Testis4 01 of 4 0.60None
Male accessory glands5 20 of 4 0.70None
Virgin spermatheca4 10 of 4 0.52None
Mated spermatheca3 10 of 4 0.49None
Adult carcass7 20 of 4 0.90None
Larval CNS4 10 of 4 0.52None
Larval Salivary gland1 00 of 4 0.12Down
Larval midgut72 64 of 4 9.37Up
Larval tubule6 11 of 4 0.80None
Larval hindgut46 54 of 4 5.94Up
Larval fat body5 10 of 4 0.70None
Larval trachea2 10 of 4 0.37Down
Larval carcass1 00 of 4 0.23Down
S2 cells (growing)1 00 of 4 0.25Down
Whole fly7 12 of 4

Looking for FBgn0032085. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime