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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032086 through 18771 annotations produced 1 hits


Annotation Number : CG17906
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032086
Gbrowse : chr2L:8994462-8995546 (+) // 100.0 //
Probeset : 1624402_at
Accessions : protein= NP_609266;, nucleotide= NM_135422;
FlyMine data for FBgn0032086.
TRiP has 1 RNAi stocks for FBgn0032086 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032086 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.50None
Head4 00 of 4 1.00None
Eye4 10 of 4 0.84None
Thoracicoabdominal ganglion4 20 of 4 0.90None
Salivary gland6 20 of 4 1.31None
Crop1 00 of 4 0.30None
Midgut70 44 of 414.50Up
Tubule4 10 of 4 0.90None
Hindgut9 00 of 4 1.90Up
Heart4 10 of 4 0.88None
Fat body8 40 of 4 1.64None
Ovary1 00 of 4 0.20None
Testis6 02 of 4 1.40None
Male accessory glands4 20 of 4 1.00None
Virgin spermatheca4 10 of 4 1.00None
Mated spermatheca2 10 of 4 0.57None
Adult carcass8 10 of 4 1.70None
Larval CNS1 20 of 4 0.38None
Larval Salivary gland10 11 of 4 2.08Up
Larval midgut30 43 of 4 6.34Up
Larval tubule6 10 of 4 1.40None
Larval hindgut14 12 of 4 2.91Up
Larval fat body6 20 of 4 1.40None
Larval trachea3 40 of 4 0.75None
Larval carcass2 10 of 4 0.55None
S2 cells (growing)1 00 of 4 0.27None
Whole fly4 10 of 4

Looking for FBgn0032086. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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