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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032088 through 18771 annotations produced 1 hits



(CG13102):

Annotation Number : CG13102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032088
Gbrowse : chr2L:9012192-9012892 (+) // 100.0 //
Probeset : 1639487_at
Accessions : protein= NP_609268;, nucleotide= NM_135424;
FlyMine data for FBgn0032088.
BDGP gene expression has embryonic in situ data for CG13102: 7 pix of staining in 2 body parts.
VDRC has 5 RNAi stocks for FBgn0032088 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye3 11 of 4 0.01Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland8 30 of 4 0.03Down
Crop1 00 of 4 0.00Down
Midgut2928 1214 of 411.20Up
Tubule317 294 of 4 1.20None
Hindgut169 54 of 4 0.60Down
Heart1 00 of 4 0.00Down
Fat body4 20 of 4 0.02Down
Ovary0 00 of 4 0.00Down
Testis1 10 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca5 00 of 4 0.02Down
Mated spermatheca4 11 of 4 0.02Down
Adult carcass4 20 of 4 0.00Down
Larval CNS1 20 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut3123 2994 of 411.93Up
Larval tubule198 294 of 4 0.80None
Larval hindgut237 174 of 4 0.91None
Larval fat body2 00 of 4 0.00Down
Larval trachea4 31 of 4 0.02Down
Larval carcass0 00 of 4 0.00Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly261 274 of 4

Looking for FBgn0032088. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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