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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032100 through 18771 annotations produced 1 hits



(CG13108):

Annotation Number : CG13108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032100
Gbrowse : chr2L:9164234-9165425 (+) // 100.0 //
Probeset : 1634678_at
Accessions : protein= NP_609276;, nucleotide= NM_135432;
FlyMine data for FBgn0032100.
BDGP gene expression has embryonic in situ data for CG13108: 6 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0032100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain150 ± 44 of 438.00Up
Head23 ± 14 of 4 6.00Up
Eye6 ± 10 of 4 1.52None
Thoracicoabdominal ganglion115 ± 44 of 429.30Up
Salivary gland4 ± 10 of 4 1.00None
Crop2 ± 10 of 4 0.60None
Midgut3 ± 10 of 4 0.90None
Tubule1 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.50None
Heart0 ± 00 of 4 0.07None
Fat body4 ± 20 of 4 1.20None
Ovary0 ± 00 of 4 0.20None
Testis3 ± 00 of 4 0.90None
Male accessory glands3 ± 10 of 4 0.90None
Virgin spermatheca6 ± 00 of 4 1.72None
Mated spermatheca10 ± 12 of 4 2.56Up
Adult carcass1 ± 00 of 4 0.30None
Larval CNS129 ± 44 of 432.87Up
Larval Salivary gland4 ± 10 of 4 1.01None
Larval midgut2 ± 20 of 4 0.73None
Larval tubule3 ± 10 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.25None
Larval fat body5 ± 00 of 4 1.40None
Larval trachea3 ± 50 of 4 0.95None
Larval carcass0 ± 00 of 4 0.23None
S2 cells (growing)0 ± 00 of 4 0.11None
Whole fly4 ± 10 of 4

Looking for FBgn0032100. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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