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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032101 through 18771 annotations produced 1 hits



(CG9586):

Annotation Number : CG9586
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032101
Gbrowse : chr2L:9165419-9166445 (-) // 100.0 //
Probeset : 1639055_at
Accessions : protein= NP_609277;, nucleotide= NM_135433;
FlyMine data for FBgn0032101.
BDGP gene expression has embryonic in situ data for CG9586: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0032101 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 ± 34 of 4 0.50Down
Head145 ± 24 of 4 0.60Down
Eye224 ± 84 of 4 0.98None
Thoracicoabdominal ganglion115 ± 14 of 4 0.50Down
Salivary gland365 ± 84 of 4 1.60Up
Crop227 ± 94 of 4 1.00None
Midgut187 ± 64 of 4 0.80Down
Tubule107 ± 64 of 4 0.50Down
Hindgut179 ± 84 of 4 0.80Down
Heart176 ± 44 of 4 0.77Down
Fat body161 ± 254 of 4 0.71Down
Ovary273 ± 124 of 4 1.20Up
Testis178 ± 54 of 4 0.80Down
Male accessory glands210 ± 134 of 4 0.90None
Virgin spermatheca88 ± 54 of 4 0.39Down
Mated spermatheca92 ± 54 of 4 0.40Down
Adult carcass205 ± 94 of 4 0.90None
Larval CNS175 ± 124 of 4 0.77Down
Larval Salivary gland468 ± 214 of 4 2.05Up
Larval midgut148 ± 44 of 4 0.65Down
Larval tubule210 ± 54 of 4 0.90None
Larval hindgut200 ± 44 of 4 0.88Down
Larval fat body435 ± 534 of 4 1.90Up
Larval trachea321 ± 354 of 4 1.41Up
Larval carcass274 ± 124 of 4 1.20Up
S2 cells (growing)362 ± 94 of 4 1.59Up
Whole fly228 ± 74 of 4

Looking for FBgn0032101. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime