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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032116 through 18771 annotations produced 1 hits



laccase-like (CG3759):

Annotation Number : CG3759
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032116
Gbrowse : chr2L:9416592-9426344 (+) // 100.0 //
Probeset : 1625245_at
Accessions : protein= NP_609287;, nucleotide= NM_135443;
Interpro : 0004322 // ferroxidase activity // inferred from sequence or structural similarity /// 0004322 // ferroxidase activity /
FlyMine data for FBgn0032116.
BDGP gene expression has embryonic in situ data for CG3759: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0032116 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head40 ± 44 of 4 1.60Up
Eye10 ± 23 of 4 0.41Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.10Down
Salivary gland8 ± 30 of 4 0.33Down
Crop23 ± 14 of 4 0.90None
Midgut202 ± 34 of 4 8.10Up
Tubule176 ± 104 of 4 7.00Up
Hindgut96 ± 104 of 4 3.80Up
Heart3 ± 10 of 4 0.14Down
Fat body9 ± 40 of 4 0.39Down
Ovary8 ± 12 of 4 0.30Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands11 ± 40 of 4 0.50Down
Virgin spermatheca5 ± 10 of 4 0.21Down
Mated spermatheca4 ± 10 of 4 0.18Down
Adult carcass44 ± 34 of 4 1.80Up
Larval CNS1 ± 10 of 4 0.06Down
Larval Salivary gland32 ± 83 of 4 1.31None
Larval midgut36 ± 34 of 4 1.47Up
Larval tubule191 ± 104 of 4 7.60Up
Larval hindgut48 ± 34 of 4 1.91Up
Larval fat body10 ± 30 of 4 0.40Down
Larval trachea7 ± 20 of 4 0.31Down
Larval carcass11 ± 00 of 4 0.47Down
S2 cells (growing)3 ± 00 of 4 0.12Down
Whole fly25 ± 24 of 4

Looking for FBgn0032116. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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