FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032117 through 18771 annotations produced 1 hits

"alpha1 (3-fucosyltransferase"):

Annotation Number : CG4435
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr2L:9428829-9431029 (-) // 100.0 //
Probeset : 1637643_at
Accessions : protein= , nucleotide= NP_609288;
Pathway : 0006486 // protein glycosylation // inferred from electronic annotation
Interpro : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
FlyMine data for full length.
Homophila reports that CG4435 is a close match (8e-13) to human gene FUT6 (NP_001035791), a gene associated with Fucosyltransferase-6 deficiency (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	33 ± 1	4 of 4	0.20	Down
Head	30 ± 3	4 of 4	0.20	Down
Eye	35 ± 3	4 of 4	0.25	Down
Thoracicoabdominal ganglion	46 ± 2	4 of 4	0.30	Down
Salivary gland	64 ± 9	4 of 4	0.45	Down
Crop	28 ± 4	3 of 4	0.20	Down
Midgut	42 ± 2	4 of 4	0.30	Down
Tubule	35 ± 1	4 of 4	0.20	Down
Hindgut	35 ± 3	4 of 4	0.20	Down
Heart	36 ± 2	4 of 4	0.26	Down
Fat body	22 ± 7	1 of 4	0.15	Down
Ovary	29 ± 2	4 of 4	0.20	Down
Testis	1304 ± 40	4 of 4	9.10	Up
Male accessory glands	48 ± 6	4 of 4	0.30	Down
Virgin spermatheca	22 ± 1	2 of 4	0.16	Down
Mated spermatheca	28 ± 2	3 of 4	0.20	Down
Adult carcass	33 ± 5	3 of 4	0.20	Down
Larval CNS	31 ± 2	4 of 4	0.22	Down
Larval Salivary gland	64 ± 1	4 of 4	0.45	Down
Larval midgut	33 ± 1	3 of 4	0.23	Down
Larval tubule	35 ± 1	4 of 4	0.20	Down
Larval hindgut	38 ± 2	4 of 4	0.27	Down
Larval fat body	240 ± 79	4 of 4	1.70	None
Larval trachea	37 ± 3	4 of 4	0.26	Down
Larval carcass	40 ± 2	4 of 4	0.28	Down
S2 cells (growing)	110 ± 1	4 of 4	0.77	None
Whole fly	144 ± 16	4 of 4

Looking for FBgn0032117. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720