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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032119 through 18771 annotations produced 1 hits



(CG3769):

Annotation Number : CG3769
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032119
Gbrowse : chr2L:9435509-9436727 (+) // 100.0 //
Probeset : 1634763_at
Accessions : protein= NP_609289;, nucleotide= NM_135445;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032119.
BioGrid reports that CG3769 interacts with CG8069 CG8580 CG4863 CG5492 .
VDRC has 3 RNAi stocks for FBgn0032119 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 1.00None
Head11 13 of 4 3.00Up
Eye7 10 of 4 2.05None
Thoracicoabdominal ganglion8 11 of 4 2.30None
Salivary gland9 30 of 4 2.49None
Crop3 21 of 4 1.00None
Midgut1 00 of 4 0.40None
Tubule4 00 of 4 1.20None
Hindgut3 00 of 4 0.80None
Heart3 00 of 4 0.83None
Fat body3 31 of 4 1.02None
Ovary2 00 of 4 0.50None
Testis2 11 of 4 0.70None
Male accessory glands10 30 of 4 2.60None
Virgin spermatheca7 12 of 4 1.99None
Mated spermatheca4 10 of 4 1.13None
Adult carcass12 21 of 4 3.20Up
Larval CNS1 10 of 4 0.46None
Larval Salivary gland5 20 of 4 1.50None
Larval midgut5 00 of 4 1.35None
Larval tubule5 21 of 4 1.50None
Larval hindgut1 00 of 4 0.40None
Larval fat body5 20 of 4 1.50None
Larval trachea1 20 of 4 0.46None
Larval carcass4 12 of 4 1.21None
S2 cells (growing)2 10 of 4 0.72None
Whole fly3 10 of 4

Looking for FBgn0032119. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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