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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032123 through 18771 annotations produced 1 hits



Organic anion transporting polypeptide 30B (Oatp30B):

Annotation Number : CG3811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032123
Gbrowse : chr2L:9521214-9540045 (+) // 100.0 //
Probeset : 1641063_s_at
Accessions : protein= NP_001162921; /// NP_609293; /// NP_723463; /// NP_995667; /// NP_995668;, nucleotide= NM_001169450; /// NM_135449; /// NM_164857; /// NM_205945; /// NM_205946;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005215 // transporter activity /
FlyMine data for FBgn0032123.
VDRC has 2 RNAi stocks for FBgn0032123 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 64 of 4 0.90Down
Head158 124 of 4 1.40Up
Eye140 54 of 4 1.21Up
Thoracicoabdominal ganglion77 54 of 4 0.70Down
Salivary gland451 144 of 4 3.90Up
Crop42 24 of 4 0.40Down
Midgut61 04 of 4 0.50Down
Tubule607 144 of 4 5.30Up
Hindgut80 34 of 4 0.70Down
Heart155 74 of 4 1.34Up
Fat body517 344 of 4 4.47Up
Ovary201 54 of 4 1.70Up
Testis85 74 of 4 0.70Down
Male accessory glands115 94 of 4 1.00None
Virgin spermatheca552 254 of 4 4.77Up
Mated spermatheca352 374 of 4 3.05Up
Adult carcass134 104 of 4 1.20None
Larval CNS89 124 of 4 0.77Down
Larval Salivary gland165 154 of 4 1.43Up
Larval midgut50 34 of 4 0.43Down
Larval tubule277 194 of 4 2.40Up
Larval hindgut236 144 of 4 2.05Up
Larval fat body285 144 of 4 2.50Up
Larval trachea199 344 of 4 1.73Up
Larval carcass140 44 of 4 1.21Up
S2 cells (growing)42 24 of 4 0.36Down
Whole fly115 44 of 4

Looking for FBgn0032123. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime