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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032126 through 18771 annotations produced 1 hits



(CG13113):

Annotation Number : CG13113
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032126
Gbrowse : chr2L:9544174-9544792 (+) // 100.0 //
Probeset : 1629407_at
Accessions : protein= NP_609296;, nucleotide= NM_135452;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032126.
BioGrid reports that CG13113 interacts with CG3214 CG1740 .
VDRC has 3 RNAi stocks for FBgn0032126 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.10Down
Salivary gland17 ± 40 of 4 0.35Down
Crop7 ± 11 of 4 0.20Down
Midgut9 ± 00 of 4 0.20Down
Tubule8 ± 00 of 4 0.20Down
Hindgut7 ± 11 of 4 0.20Down
Heart1 ± 00 of 4 0.03Down
Fat body7 ± 20 of 4 0.15Down
Ovary135 ± 174 of 4 2.70Up
Testis2 ± 10 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.09Down
Mated spermatheca6 ± 12 of 4 0.13Down
Adult carcass9 ± 30 of 4 0.20Down
Larval CNS3 ± 10 of 4 0.06Down
Larval Salivary gland5 ± 10 of 4 0.12Down
Larval midgut7 ± 10 of 4 0.14Down
Larval tubule5 ± 00 of 4 0.10Down
Larval hindgut5 ± 11 of 4 0.12Down
Larval fat body4 ± 10 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.03Down
Larval carcass0 ± 00 of 4 0.02Down
S2 cells (growing)4 ± 10 of 4 0.10Down
Whole fly50 ± 84 of 4

Looking for FBgn0032126. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime