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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032129 through 18771 annotations produced 1 hits



junctophilin (jp):

Annotation Number : CG4405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032129
Gbrowse : chr2L:9547761-9566750 (-) // 100.0 //
Probeset : 1634184_a_at
Accessions : protein= NP_001097133; /// NP_523525; /// NP_723468;, nucleotide= NM_001103663; /// NM_078801; /// NM_164858;
FlyMine data for FBgn0032129.
BDGP gene expression has embryonic in situ data for jp: 14 pix of staining in 3 body parts.
Homophila reports that CG4405 is a close match (2e-81) to human gene HDL2;JP3;JPH3 (NP_065706), a gene associated with Huntington disease-like 2, 606438 (3).
VDRC has 3 RNAi stocks for FBgn0032129 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain238 ± 134 of 4 5.40Up
Head80 ± 74 of 4 1.80Up
Eye23 ± 34 of 4 0.54Down
Thoracicoabdominal ganglion149 ± 34 of 4 3.40Up
Salivary gland12 ± 51 of 4 0.27Down
Crop183 ± 94 of 4 4.10Up
Midgut8 ± 03 of 4 0.20Down
Tubule6 ± 00 of 4 0.10Down
Hindgut63 ± 34 of 4 1.40Up
Heart46 ± 24 of 4 1.06None
Fat body12 ± 34 of 4 0.28Down
Ovary3 ± 00 of 4 0.10Down
Testis7 ± 04 of 4 0.20Down
Male accessory glands16 ± 04 of 4 0.40Down
Virgin spermatheca6 ± 02 of 4 0.15Down
Mated spermatheca11 ± 14 of 4 0.26Down
Adult carcass120 ± 94 of 4 2.70Up
Larval CNS25 ± 34 of 4 0.56Down
Larval Salivary gland9 ± 33 of 4 0.22Down
Larval midgut8 ± 03 of 4 0.19Down
Larval tubule7 ± 01 of 4 0.20Down
Larval hindgut41 ± 54 of 4 0.93None
Larval fat body2 ± 20 of 4 0.10Down
Larval trachea5 ± 03 of 4 0.11Down
Larval carcass70 ± 84 of 4 1.59Up
S2 cells (growing)12 ± 04 of 4 0.28Down
Whole fly44 ± 34 of 4

Looking for FBgn0032129. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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