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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032131 through 18771 annotations produced 1 hits


/// nemo (CG3841 /// nmo):

Annotation Number : CG3841
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032131
Gbrowse : chr2L:9589665-9591547 (+) // 100.0 //
Probeset : 1632400_at
Accessions : protein= NP_609300;, nucleotide= NM_135456;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0032131.
Homophila reports that CG3841 is a close match (4e-27) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 3 RNAi stocks for FBgn0032131 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.06Down
Crop3 ± 10 of 4 0.00Down
Midgut1030 ± 184 of 415.40Up
Tubule5 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart3 ± 00 of 4 0.05Down
Fat body5 ± 20 of 4 0.09Down
Ovary1 ± 00 of 4 0.00Down
Testis102 ± 54 of 4 1.50Up
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.05Down
Mated spermatheca3 ± 10 of 4 0.05Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.05Down
Larval Salivary gland6 ± 20 of 4 0.09Down
Larval midgut280 ± 194 of 4 4.18Up
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.04Down
Larval fat body20 ± 92 of 4 0.30Down
Larval trachea3 ± 30 of 4 0.06Down
Larval carcass6 ± 12 of 4 0.10Down
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly67 ± 64 of 4

Looking for FBgn0032131. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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