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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032139 through 18771 annotations produced 1 hits



(CG13116):

Annotation Number : CG13116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032139
Gbrowse : chr2L:9729939-9730949 (+) // 100.0 //
Probeset : 1638378_at
Accessions : protein= NP_609306;, nucleotide= NM_135462;
FlyMine data for FBgn0032139.
VDRC has 3 RNAi stocks for FBgn0032139 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 13 of 4 0.40Down
Head217 ± 114 of 4 7.60Up
Eye407 ± 324 of 414.29Up
Thoracicoabdominal ganglion5 ± 10 of 4 0.20Down
Salivary gland32 ± 52 of 4 1.12None
Crop296 ± 284 of 410.40Up
Midgut5 ± 00 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut95 ± 34 of 4 3.30Up
Heart21 ± 34 of 4 0.74None
Fat body24 ± 34 of 4 0.86None
Ovary5 ± 11 of 4 0.20Down
Testis6 ± 02 of 4 0.20Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca12 ± 11 of 4 0.45Down
Mated spermatheca21 ± 23 of 4 0.74None
Adult carcass183 ± 114 of 4 6.40Up
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.11Down
Larval midgut3 ± 10 of 4 0.13Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut15 ± 13 of 4 0.53Down
Larval fat body23 ± 23 of 4 0.80None
Larval trachea52 ± 154 of 4 1.85Up
Larval carcass38 ± 154 of 4 1.34None
S2 cells (growing)12 ± 24 of 4 0.44Down
Whole fly28 ± 24 of 4

Looking for FBgn0032139. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime