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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032147 through 18771 annotations produced 1 hits



"Inositol 1 (4):

Annotation Number : CG4026
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2L:9782389-9788496 (+) // 100.0 //
Probeset : 1634619_at
Accessions : protein= EC:2.7.1.127, nucleotide=
Interpro : 0006979 // response to oxidative stress // inferred from mutant phenotype
Homophila reports that CG4026 is a close match (1e-50) to human gene ITPKC (NP_079470), a gene associated with {Kawasaki disease, susceptibility to}, 611775 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 03 of 4 0.30Down
Head41 ± 54 of 4 0.70Down
Eye118 ± 54 of 4 1.97Up
Thoracicoabdominal ganglion24 ± 14 of 4 0.40Down
Salivary gland140 ± 94 of 4 2.34Up
Crop77 ± 44 of 4 1.30Up
Midgut74 ± 34 of 4 1.20Up
Tubule329 ± 364 of 4 5.50Up
Hindgut50 ± 34 of 4 0.80None
Heart134 ± 104 of 4 2.23Up
Fat body84 ± 124 of 4 1.40Up
Ovary57 ± 24 of 4 1.00None
Testis18 ± 14 of 4 0.30Down
Male accessory glands120 ± 64 of 4 2.00Up
Virgin spermatheca83 ± 34 of 4 1.39Up
Mated spermatheca92 ± 14 of 4 1.54Up
Adult carcass63 ± 74 of 4 1.10None
Larval CNS23 ± 14 of 4 0.39Down
Larval Salivary gland97 ± 84 of 4 1.62Up
Larval midgut50 ± 64 of 4 0.85None
Larval tubule177 ± 74 of 4 3.00Up
Larval hindgut50 ± 34 of 4 0.84None
Larval fat body133 ± 144 of 4 2.20Up
Larval trachea74 ± 104 of 4 1.24None
Larval carcass57 ± 34 of 4 0.96None
S2 cells (growing)58 ± 14 of 4 0.97None
Whole fly60 ± 34 of 4

Looking for FBgn0032147. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime