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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032149 through 18771 annotations produced 1 hits



(CG4036):

Annotation Number : CG4036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032149
Gbrowse : chr2L:9790951-9791958 (+) // 100.0 //
Probeset : 1625836_at
Accessions : protein= NP_609314;, nucleotide= NM_135470;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from
FlyMine data for FBgn0032149.
BioGrid reports that CG4036 interacts with CG5504 .
VDRC has 2 RNAi stocks for FBgn0032149 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain110 34 of 4 1.50Up
Head77 44 of 4 1.10None
Eye119 34 of 4 1.64Up
Thoracicoabdominal ganglion93 54 of 4 1.30Up
Salivary gland138 134 of 4 1.90Up
Crop87 34 of 4 1.20Up
Midgut82 14 of 4 1.10Up
Tubule63 34 of 4 0.90Down
Hindgut69 64 of 4 1.00None
Heart91 64 of 4 1.25None
Fat body80 114 of 4 1.10None
Ovary71 24 of 4 1.00None
Testis57 14 of 4 0.80Down
Male accessory glands179 134 of 4 2.50Up
Virgin spermatheca79 14 of 4 1.09None
Mated spermatheca103 54 of 4 1.42Up
Adult carcass67 24 of 4 0.90None
Larval CNS158 184 of 4 2.17Up
Larval Salivary gland162 34 of 4 2.23Up
Larval midgut61 34 of 4 0.83Down
Larval tubule81 04 of 4 1.10Up
Larval hindgut77 34 of 4 1.06None
Larval fat body43 54 of 4 0.60Down
Larval trachea197 154 of 4 2.70Up
Larval carcass74 54 of 4 1.01None
S2 cells (growing)156 74 of 4 2.15Up
Whole fly73 24 of 4

Looking for FBgn0032149. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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