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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032151 through 18771 annotations produced 2 hits



Dalpha6 (nAcRalpha-30D):

Annotation Number : CG4128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032151
Gbrowse : chr2L:9796971-9886214 (-) // 100.0 //
Probeset : 1633963_a_at
Accessions : protein= NP_001033888; /// NP_609316; /// NP_723494; /// NP_995673; /// NP_995674; /// NP_995675;, nucleotide= NM_001038799; /// NM_135472; /// NM_164874; /// NM_205951; /// NM_205952; /// NM_205953;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cat
FlyMine data for FBgn0032151.
Homophila reports that CG4128 is a close match (6e-11) to human gene GABRA2 (NP_000798), a gene associated with {Alcoholism, susceptibility to}, 103780 (3).
BioGrid reports that CG4128 interacts with CG9025 .
TRiP has 1 RNAi stocks for FBgn0032151 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032151 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain494 244 of 462.00Up
Head25 34 of 4 3.20Up
Eye24 24 of 4 3.08Up
Thoracicoabdominal ganglion263 154 of 433.00Up
Salivary gland10 30 of 4 1.29None
Crop2 00 of 4 0.30Down
Midgut2 00 of 4 0.30Down
Tubule6 10 of 4 0.80None
Hindgut4 00 of 4 0.60Down
Heart2 10 of 4 0.28Down
Fat body12 40 of 4 1.57None
Ovary1 00 of 4 0.20Down
Testis3 00 of 4 0.40Down
Male accessory glands5 30 of 4 0.70None
Virgin spermatheca14 00 of 4 1.78Up
Mated spermatheca17 52 of 4 2.19None
Adult carcass6 20 of 4 0.80None
Larval CNS157 104 of 419.77Up
Larval Salivary gland2 00 of 4 0.32Down
Larval midgut2 10 of 4 0.30Down
Larval tubule5 10 of 4 0.60None
Larval hindgut3 10 of 4 0.42Down
Larval fat body6 20 of 4 0.80None
Larval trachea4 30 of 4 0.56None
Larval carcass3 20 of 4 0.49None
S2 cells (growing)2 00 of 4 0.29Down
Whole fly8 00 of 4



():

Annotation Number : HDC01683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2L:9876624-9878524 (-) // 100.0 //
Probeset : 1624163_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 54 of 4 3.60Up
Head15 10 of 4 1.70Up
Eye11 11 of 4 1.25None
Thoracicoabdominal ganglion26 32 of 4 2.90Up
Salivary gland12 60 of 4 1.39None
Crop1 00 of 4 0.10Down
Midgut3 10 of 4 0.40Down
Tubule5 00 of 4 0.60Down
Hindgut3 00 of 4 0.40Down
Heart1 00 of 4 0.15Down
Fat body6 60 of 4 0.74None
Ovary1 00 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands7 10 of 4 0.80None
Virgin spermatheca6 20 of 4 0.68None
Mated spermatheca7 11 of 4 0.77None
Adult carcass5 20 of 4 0.60None
Larval CNS21 44 of 4 2.43Up
Larval Salivary gland5 20 of 4 0.64None
Larval midgut2 10 of 4 0.23Down
Larval tubule2 00 of 4 0.20Down
Larval hindgut3 10 of 4 0.35Down
Larval fat body2 00 of 4 0.30Down
Larval trachea1 20 of 4 0.22Down
Larval carcass3 10 of 4 0.37Down
S2 cells (growing)3 10 of 4 0.44Down
Whole fly9 00 of 4

Looking for FBgn0032151. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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