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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032153 through 18771 annotations produced 1 hits



(CG4537):

Annotation Number : CG4537
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032153
Gbrowse : chr2L:9890799-9891262 (+) // 100.0 //
Probeset : 1634876_at
Accessions : protein= NP_001097135;, nucleotide= NM_001103665;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032153.
BioGrid reports that CG4537 interacts with CG8931 CG5094 .
VDRC has 1 RNAi stocks for FBgn0032153 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 44 of 4 0.70None
Head32 34 of 4 0.70Down
Eye41 24 of 4 0.87None
Thoracicoabdominal ganglion31 24 of 4 0.60Down
Salivary gland37 33 of 4 0.78None
Crop35 44 of 4 0.70None
Midgut24 24 of 4 0.50Down
Tubule15 12 of 4 0.30Down
Hindgut18 24 of 4 0.40Down
Heart29 24 of 4 0.61Down
Fat body32 54 of 4 0.67Down
Ovary77 24 of 4 1.60Up
Testis39 14 of 4 0.80None
Male accessory glands68 34 of 4 1.40Up
Virgin spermatheca23 21 of 4 0.49Down
Mated spermatheca26 14 of 4 0.55Down
Adult carcass23 14 of 4 0.50Down
Larval CNS57 44 of 4 1.20None
Larval Salivary gland50 34 of 4 1.04None
Larval midgut14 20 of 4 0.30Down
Larval tubule27 04 of 4 0.60Down
Larval hindgut24 24 of 4 0.52Down
Larval fat body39 24 of 4 0.80None
Larval trachea49 44 of 4 1.04None
Larval carcass25 34 of 4 0.53Down
S2 cells (growing)27 14 of 4 0.57Down
Whole fly48 44 of 4

Looking for FBgn0032153. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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