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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032157 through 18771 annotations produced 1 hits



(CG5899):

Annotation Number : CG5899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032157
Gbrowse : chr2L:9908827-9912585 (-) // 100.0 //
Probeset : 1624673_at
Accessions : protein= NP_001033889; /// NP_001033890; /// NP_609320;, nucleotide= NM_001038800; /// NM_001038801; /// NM_135476;
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elec
FlyMine data for FBgn0032157.
Homophila reports that CG5899 is a close match (6e-15) to human gene HARP;SIOD;SMARCAL1 (NP_054859), a gene associated with Schimke immunoosseous dysplasia, 242900 (3).
TRiP has 1 RNAi stocks for FBgn0032157 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032157 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 ± 54 of 4 0.70Down
Head58 ± 54 of 4 0.40Down
Eye39 ± 44 of 4 0.30Down
Thoracicoabdominal ganglion88 ± 34 of 4 0.70Down
Salivary gland72 ± 54 of 4 0.55Down
Crop79 ± 64 of 4 0.60Down
Midgut59 ± 44 of 4 0.50Down
Tubule61 ± 34 of 4 0.50Down
Hindgut60 ± 34 of 4 0.50Down
Heart34 ± 24 of 4 0.26Down
Fat body49 ± 84 of 4 0.37Down
Ovary261 ± 44 of 4 2.00Up
Testis36 ± 14 of 4 0.30Down
Male accessory glands96 ± 54 of 4 0.70Down
Virgin spermatheca56 ± 34 of 4 0.42Down
Mated spermatheca63 ± 24 of 4 0.48Down
Adult carcass38 ± 34 of 4 0.30Down
Larval CNS214 ± 184 of 4 1.62Up
Larval Salivary gland80 ± 44 of 4 0.61Down
Larval midgut50 ± 24 of 4 0.38Down
Larval tubule46 ± 34 of 4 0.40Down
Larval hindgut71 ± 04 of 4 0.54Down
Larval fat body31 ± 44 of 4 0.20Down
Larval trachea70 ± 54 of 4 0.53Down
Larval carcass64 ± 34 of 4 0.49Down
S2 cells (growing)137 ± 14 of 4 1.04None
Whole fly132 ± 24 of 4

Looking for FBgn0032157. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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