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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032160 through 18771 annotations produced 1 hits



(CG4598):

Annotation Number : CG4598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032160
Gbrowse : chr2L:9918634-9919967 (+) // 100.0 //
Probeset : 1632952_at
Accessions : protein= NP_609322;, nucleotide= NM_135478;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activ
FlyMine data for FBgn0032160.
BioGrid reports that CG4598 interacts with CG4998 .
VDRC has 3 RNAi stocks for FBgn0032160 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 54 of 4 0.30Down
Head378 34 of 4 1.20Up
Eye225 154 of 4 0.72Down
Thoracicoabdominal ganglion130 54 of 4 0.40Down
Salivary gland325 84 of 4 1.04None
Crop645 174 of 4 2.10Up
Midgut378 104 of 4 1.20Up
Tubule378 154 of 4 1.20Up
Hindgut431 104 of 4 1.40Up
Heart674 284 of 4 2.15Up
Fat body818 894 of 4 2.61Up
Ovary400 54 of 4 1.30Up
Testis43 14 of 4 0.10Down
Male accessory glands203 74 of 4 0.60Down
Virgin spermatheca619 204 of 4 1.97Up
Mated spermatheca578 314 of 4 1.85Up
Adult carcass496 104 of 4 1.60Up
Larval CNS230 174 of 4 0.73Down
Larval Salivary gland1187 1564 of 4 3.79Up
Larval midgut314 54 of 4 1.00None
Larval tubule561 244 of 4 1.80Up
Larval hindgut275 44 of 4 0.88Down
Larval fat body779 884 of 4 2.50Up
Larval trachea453 234 of 4 1.45Up
Larval carcass363 174 of 4 1.16None
S2 cells (growing)306 34 of 4 0.98None
Whole fly313 84 of 4

Looking for FBgn0032160. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime