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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032161 through 18771 annotations produced 1 hits



(CG4594):

Annotation Number : CG4594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032161
Gbrowse : chr2L:9920350-9921459 (+) // 100.0 //
Probeset : 1630640_at
Accessions : protein= NP_609323;, nucleotide= NM_135479;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activ
FlyMine data for FBgn0032161.
BDGP gene expression has embryonic in situ data for CG4594: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032161 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 13 of 4 0.10Down
Head67 ± 54 of 4 0.70Down
Eye55 ± 34 of 4 0.56Down
Thoracicoabdominal ganglion16 ± 22 of 4 0.20Down
Salivary gland1293 ± 494 of 413.02Up
Crop144 ± 64 of 4 1.40Up
Midgut108 ± 34 of 4 1.10None
Tubule295 ± 214 of 4 3.00Up
Hindgut163 ± 74 of 4 1.60Up
Heart131 ± 84 of 4 1.32Up
Fat body101 ± 144 of 4 1.02None
Ovary176 ± 54 of 4 1.80Up
Testis22 ± 14 of 4 0.20Down
Male accessory glands56 ± 34 of 4 0.60Down
Virgin spermatheca58 ± 44 of 4 0.59Down
Mated spermatheca96 ± 114 of 4 0.97None
Adult carcass90 ± 64 of 4 0.90None
Larval CNS37 ± 14 of 4 0.38Down
Larval Salivary gland974 ± 534 of 4 9.81Up
Larval midgut82 ± 24 of 4 0.83Down
Larval tubule78 ± 44 of 4 0.80Down
Larval hindgut238 ± 134 of 4 2.40Up
Larval fat body68 ± 64 of 4 0.70Down
Larval trachea118 ± 174 of 4 1.20None
Larval carcass84 ± 54 of 4 0.85None
S2 cells (growing)34 ± 44 of 4 0.35Down
Whole fly99 ± 24 of 4

Looking for FBgn0032161. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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