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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032162 through 18771 annotations produced 1 hits



(CG4592):

Annotation Number : CG4592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032162
Gbrowse : chr2L:9921637-9922752 (+) // 100.0 //
Probeset : 1638090_at
Accessions : protein= NP_609324;, nucleotide= NM_135480;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activ
FlyMine data for FBgn0032162.
VDRC has 1 RNAi stocks for FBgn0032162 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 23 of 4 0.20Down
Head85 ± 24 of 4 0.60Down
Eye58 ± 44 of 4 0.37Down
Thoracicoabdominal ganglion39 ± 13 of 4 0.30Down
Salivary gland294 ± 24 of 4 1.90Up
Crop155 ± 44 of 4 1.00None
Midgut111 ± 14 of 4 0.70Down
Tubule958 ± 1064 of 4 6.20Up
Hindgut282 ± 74 of 4 1.80Up
Heart1043 ± 574 of 4 6.74Up
Fat body806 ± 994 of 4 5.20Up
Ovary123 ± 24 of 4 0.80Down
Testis33 ± 14 of 4 0.20Down
Male accessory glands76 ± 64 of 4 0.50Down
Virgin spermatheca133 ± 134 of 4 0.86None
Mated spermatheca129 ± 104 of 4 0.83None
Adult carcass668 ± 134 of 4 4.30Up
Larval CNS92 ± 214 of 4 0.60Down
Larval Salivary gland416 ± 454 of 4 2.69Up
Larval midgut100 ± 24 of 4 0.65Down
Larval tubule485 ± 264 of 4 3.10Up
Larval hindgut545 ± 504 of 4 3.52Up
Larval fat body168 ± 194 of 4 1.10None
Larval trachea194 ± 104 of 4 1.25Up
Larval carcass249 ± 214 of 4 1.61Up
S2 cells (growing)54 ± 14 of 4 0.35Down
Whole fly155 ± 64 of 4

Looking for FBgn0032162. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime