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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032167 through 18771 annotations produced 1 hits



(CG5853):

Annotation Number : CG5853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032167
Gbrowse : chr2L:9940768-9947442 (-) // 100.0 //
Probeset : 1628398_at
Accessions : protein= NP_788019;, nucleotide= NM_176005;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0032167.
BDGP gene expression has embryonic in situ data for CG5853: 26 pix of staining in 5 body parts.
Homophila reports that CG5853 is a close match (5e-11) to human gene ABCB4;MDR3;PGY3 (NP_061337), a gene associated with Cholestasis, familial intrahepatic, of pregnancy, 147480 (3);Cholestasis, progressive familial intrahepatic 3, 602347 (3);Gallbladder disease 1, 600803 (3).
TRiP has 1 RNAi stocks for FBgn0032167 available for purchase.
VDRC has 4 RNAi stocks for FBgn0032167 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 11 of 4 0.10Down
Head188 ± 174 of 4 1.00None
Eye117 ± 94 of 4 0.61Down
Thoracicoabdominal ganglion13 ± 31 of 4 0.10Down
Salivary gland24 ± 70 of 4 0.13Down
Crop455 ± 224 of 4 2.40Up
Midgut992 ± 354 of 4 5.20Up
Tubule237 ± 704 of 4 1.20None
Hindgut515 ± 194 of 4 2.70Up
Heart154 ± 34 of 4 0.81None
Fat body365 ± 614 of 4 1.91Up
Ovary66 ± 44 of 4 0.30Down
Testis38 ± 22 of 4 0.20Down
Male accessory glands16 ± 30 of 4 0.10Down
Virgin spermatheca188 ± 174 of 4 0.98None
Mated spermatheca159 ± 204 of 4 0.83None
Adult carcass228 ± 164 of 4 1.20None
Larval CNS19 ± 34 of 4 0.10Down
Larval Salivary gland31 ± 12 of 4 0.17Down
Larval midgut1359 ± 824 of 4 7.10Up
Larval tubule542 ± 264 of 4 2.80Up
Larval hindgut355 ± 174 of 4 1.86Up
Larval fat body166 ± 154 of 4 0.90None
Larval trachea65 ± 154 of 4 0.34Down
Larval carcass56 ± 34 of 4 0.29Down
S2 cells (growing)66 ± 34 of 4 0.35Down
Whole fly191 ± 134 of 4

Looking for FBgn0032167. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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