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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032168 through 18771 annotations produced 1 hits



(CG13126):

Annotation Number : CG13126
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032168
Gbrowse : chr2L:9952427-9954143 (-) // 100.0 //
Probeset : 1632049_at
Accessions : protein= NP_609330;, nucleotide= NM_135486;
Interpro : 0005507 // copper ion binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferr
FlyMine data for FBgn0032168.
BDGP gene expression has embryonic in situ data for CG13126: 15 pix of staining in 11 body parts.
VDRC has 1 RNAi stocks for FBgn0032168 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 14 of 4 1.20Up
Head35 14 of 4 0.70Down
Eye36 24 of 4 0.70Down
Thoracicoabdominal ganglion70 04 of 4 1.40Up
Salivary gland20 31 of 4 0.40Down
Crop38 34 of 4 0.70Down
Midgut26 12 of 4 0.50Down
Tubule37 44 of 4 0.70Down
Hindgut40 34 of 4 0.80Down
Heart29 04 of 4 0.57Down
Fat body30 54 of 4 0.59Down
Ovary116 34 of 4 2.30Up
Testis9 03 of 4 0.20Down
Male accessory glands52 74 of 4 1.00None
Virgin spermatheca19 13 of 4 0.37Down
Mated spermatheca26 24 of 4 0.51Down
Adult carcass34 44 of 4 0.70Down
Larval CNS49 84 of 4 0.95None
Larval Salivary gland42 34 of 4 0.82None
Larval midgut19 20 of 4 0.38Down
Larval tubule28 14 of 4 0.60Down
Larval hindgut46 44 of 4 0.90None
Larval fat body16 22 of 4 0.30Down
Larval trachea49 74 of 4 0.96None
Larval carcass32 44 of 4 0.63Down
S2 cells (growing)61 34 of 4 1.20None
Whole fly51 24 of 4

Looking for FBgn0032168. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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