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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032169 through 18771 annotations produced 1 hits



(CG4709):

Annotation Number : CG4709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032169
Gbrowse : chr2L:9954448-9956179 (+) // 100.0 //
Probeset : 1640476_at
Accessions : protein= NP_609331;, nucleotide= NM_135487;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0032169.
BioGrid reports that CG4709 interacts with CG7757 .
VDRC has 2 RNAi stocks for FBgn0032169 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 24 of 4 0.80None
Head35 54 of 4 0.50Down
Eye49 44 of 4 0.75Down
Thoracicoabdominal ganglion59 14 of 4 0.90None
Salivary gland33 23 of 4 0.51Down
Crop50 74 of 4 0.80None
Midgut23 30 of 4 0.40Down
Tubule60 34 of 4 0.90None
Hindgut40 34 of 4 0.60Down
Heart36 14 of 4 0.55Down
Fat body31 24 of 4 0.48Down
Ovary138 34 of 4 2.10Up
Testis14 14 of 4 0.20Down
Male accessory glands48 84 of 4 0.70None
Virgin spermatheca43 34 of 4 0.65Down
Mated spermatheca55 64 of 4 0.84None
Adult carcass28 33 of 4 0.40Down
Larval CNS114 84 of 4 1.74Up
Larval Salivary gland51 24 of 4 0.79Down
Larval midgut21 30 of 4 0.33Down
Larval tubule51 24 of 4 0.80Down
Larval hindgut37 34 of 4 0.56Down
Larval fat body41 63 of 4 0.60Down
Larval trachea100 54 of 4 1.52Up
Larval carcass33 24 of 4 0.51Down
S2 cells (growing)67 34 of 4 1.02None
Whole fly65 24 of 4

Looking for FBgn0032169. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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