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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032170 through 18771 annotations produced 1 hits



(CG4658):

Annotation Number : CG4658
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032170
Gbrowse : chr2L:9957286-9960170 (+) // 100.0 //
Probeset : 1636884_s_at
Accessions : protein= NP_788020; /// NP_788021; /// NP_788022;, nucleotide= NM_176006; /// NM_176007; /// NM_176008;
FlyMine data for FBgn0032170.
VDRC has 3 RNAi stocks for FBgn0032170 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 ± 134 of 4 1.10None
Head151 ± 164 of 4 0.80None
Eye184 ± 94 of 4 0.93None
Thoracicoabdominal ganglion239 ± 54 of 4 1.20Up
Salivary gland799 ± 154 of 4 4.02Up
Crop380 ± 94 of 4 1.90Up
Midgut436 ± 134 of 4 2.20Up
Tubule592 ± 704 of 4 3.00Up
Hindgut663 ± 134 of 4 3.30Up
Heart148 ± 104 of 4 0.75Down
Fat body170 ± 34 of 4 0.86Down
Ovary268 ± 44 of 4 1.40Up
Testis53 ± 34 of 4 0.30Down
Male accessory glands580 ± 224 of 4 2.90Up
Virgin spermatheca253 ± 144 of 4 1.27Up
Mated spermatheca214 ± 84 of 4 1.08None
Adult carcass237 ± 114 of 4 1.20Up
Larval CNS161 ± 64 of 4 0.81Down
Larval Salivary gland502 ± 44 of 4 2.53Up
Larval midgut571 ± 214 of 4 2.87Up
Larval tubule1733 ± 194 of 4 8.70Up
Larval hindgut566 ± 344 of 4 2.85Up
Larval fat body286 ± 224 of 4 1.40Up
Larval trachea372 ± 594 of 4 1.87Up
Larval carcass314 ± 204 of 4 1.58Up
S2 cells (growing)326 ± 44 of 4 1.64Up
Whole fly198 ± 64 of 4

Looking for FBgn0032170. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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