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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032171 through 18771 annotations produced 1 hits


Annotation Number : CG5846
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032171
Gbrowse : chr2L:9956147-9957807 (-) // 100.0 //
Probeset : 1625426_at
Accessions : protein= NP_609333;, nucleotide= NM_135489;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032171.
BDGP gene expression has embryonic in situ data for CG5846: 5 pix of staining in 1 body parts.
Homophila reports that CG5846 is a close match (2e-16) to human gene RFXANK (NP_604389), a gene associated with MHC class II deficiency, complementation group B, 209920 (3).
BioGrid reports that CG5846 interacts with CG6198 CG8924 .
VDRC has 2 RNAi stocks for FBgn0032171 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 34 of 4 0.70Down
Head54 34 of 4 0.60Down
Eye65 24 of 4 0.70Down
Thoracicoabdominal ganglion80 24 of 4 0.80Down
Salivary gland198 124 of 4 2.10Up
Crop122 54 of 4 1.30Up
Midgut43 24 of 4 0.50Down
Tubule66 54 of 4 0.70Down
Hindgut194 34 of 4 2.10Up
Heart73 34 of 4 0.78Down
Fat body51 74 of 4 0.54Down
Ovary151 24 of 4 1.60Up
Testis29 34 of 4 0.30Down
Male accessory glands108 24 of 4 1.10Up
Virgin spermatheca45 24 of 4 0.48Down
Mated spermatheca51 34 of 4 0.55Down
Adult carcass69 14 of 4 0.70Down
Larval CNS57 44 of 4 0.61Down
Larval Salivary gland69 44 of 4 0.73Down
Larval midgut38 14 of 4 0.40Down
Larval tubule411 214 of 4 4.30Up
Larval hindgut78 34 of 4 0.83Down
Larval fat body43 34 of 4 0.50Down
Larval trachea92 74 of 4 0.98None
Larval carcass45 24 of 4 0.48Down
S2 cells (growing)63 14 of 4 0.67Down
Whole fly94 34 of 4

Looking for FBgn0032171. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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