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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032181 through 18771 annotations produced 1 hits



(CG13133):

Annotation Number : CG13133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032181
Gbrowse : chr2L:10091581-10092235 (-) // 100.0 //
Probeset : 1636818_at
Accessions : protein= NP_609343;, nucleotide= NM_135499;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032181.
BioGrid reports that CG13133 interacts with CG14317 CG8863 .
VDRC has 2 RNAi stocks for FBgn0032181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head78 64 of 4 7.40Up
Eye10 33 of 4 0.99None
Thoracicoabdominal ganglion13 14 of 4 1.30None
Salivary gland13 60 of 4 1.31None
Crop1 00 of 4 0.20Down
Midgut0 00 of 4 0.10Down
Tubule1 00 of 4 0.20Down
Hindgut1 00 of 4 0.10Down
Heart0 00 of 4 0.04Down
Fat body1 00 of 4 0.09Down
Ovary1 00 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.35Down
Mated spermatheca5 20 of 4 0.52None
Adult carcass33 24 of 4 3.20Up
Larval CNS1 10 of 4 0.13Down
Larval Salivary gland8 00 of 4 0.83None
Larval midgut0 00 of 4 0.08Down
Larval tubule4 20 of 4 0.40None
Larval hindgut1 00 of 4 0.09Down
Larval fat body4 10 of 4 0.40Down
Larval trachea1 10 of 4 0.17Down
Larval carcass9 31 of 4 0.94None
S2 cells (growing)1 00 of 4 0.18Down
Whole fly10 03 of 4

Looking for FBgn0032181. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime