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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032184 through 18771 annotations produced 2 hits



(CG13135):

Annotation Number : CG13135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032184
Gbrowse : chr2L:10122340-10122739 (-) // 100.0 //
Probeset : 1625802_a_at
Accessions : protein= NP_723521;, nucleotide= NM_164888;
FlyMine data for FBgn0032184.
VDRC has 2 RNAi stocks for FBgn0032184 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head2 10 of 4 0.60None
Eye1 00 of 4 0.31None
Thoracicoabdominal ganglion1 00 of 4 0.30None
Salivary gland6 20 of 4 1.75None
Crop2 00 of 4 0.50None
Midgut3 00 of 4 0.90None
Tubule1 00 of 4 0.40Down
Hindgut1 00 of 4 0.40None
Heart0 00 of 4 0.19None
Fat body4 10 of 4 1.04None
Ovary1 00 of 4 0.30None
Testis2 00 of 4 0.60None
Male accessory glands1 00 of 4 0.50None
Virgin spermatheca2 00 of 4 0.55None
Mated spermatheca1 00 of 4 0.45None
Adult carcass3 00 of 4 0.80None
Larval CNS1 00 of 4 0.35None
Larval Salivary gland33 92 of 4 8.86Up
Larval midgut3 00 of 4 0.93None
Larval tubule1 00 of 4 0.30None
Larval hindgut1 00 of 4 0.33None
Larval fat body4 20 of 4 1.00None
Larval trachea5 30 of 4 1.56None
Larval carcass1 00 of 4 0.35None
S2 cells (growing)1 00 of 4 0.29None
Whole fly3 10 of 4



(CG13135):

Annotation Number : CG13135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032184
Gbrowse : chr2L:10121846-10122739 (-) // 100.0 //
Probeset : 1638433_at
Accessions : protein= NP_723521;, nucleotide= NM_164888;
FlyMine data for FBgn0032184.
VDRC has 2 RNAi stocks for FBgn0032184 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.90None
Head8 20 of 4 1.00None
Eye5 20 of 4 0.60None
Thoracicoabdominal ganglion6 00 of 4 0.80None
Salivary gland16 30 of 4 1.90None
Crop10 20 of 4 1.20None
Midgut8 20 of 4 1.00None
Tubule7 00 of 4 0.80Down
Hindgut15 11 of 4 1.80Up
Heart1 00 of 4 0.22Down
Fat body9 40 of 4 1.16None
Ovary7 01 of 4 0.90None
Testis11 21 of 4 1.40None
Male accessory glands20 10 of 4 2.40Up
Virgin spermatheca10 10 of 4 1.25None
Mated spermatheca8 11 of 4 0.94None
Adult carcass19 31 of 4 2.30Up
Larval CNS5 20 of 4 0.66None
Larval Salivary gland3 10 of 4 0.43None
Larval midgut5 10 of 4 0.69None
Larval tubule9 20 of 4 1.10None
Larval hindgut6 21 of 4 0.71None
Larval fat body6 20 of 4 0.80None
Larval trachea4 20 of 4 0.49None
Larval carcass5 10 of 4 0.64None
S2 cells (growing)9 10 of 4 1.09None
Whole fly8 10 of 4

Looking for FBgn0032184. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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