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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032193 through 18771 annotations produced 1 hits



(CG5727):

Annotation Number : CG5727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032193
Gbrowse : chr2L:10209852-10210669 (-) // 100.0 //
Probeset : 1639856_at
Accessions : protein= NP_609355;, nucleotide= NM_135511;
FlyMine data for FBgn0032193.
BDGP gene expression has embryonic in situ data for CG5727: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0032193 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 ± 54 of 4 1.20None
Head137 ± 134 of 4 1.00None
Eye219 ± 84 of 4 1.61Up
Thoracicoabdominal ganglion156 ± 64 of 4 1.10None
Salivary gland87 ± 94 of 4 0.64Down
Crop136 ± 54 of 4 1.00None
Midgut74 ± 54 of 4 0.50Down
Tubule74 ± 24 of 4 0.50Down
Hindgut99 ± 54 of 4 0.70None
Heart107 ± 84 of 4 0.79None
Fat body108 ± 74 of 4 0.79None
Ovary224 ± 54 of 4 1.60Up
Testis291 ± 154 of 4 2.10Up
Male accessory glands167 ± 54 of 4 1.20None
Virgin spermatheca158 ± 44 of 4 1.16None
Mated spermatheca121 ± 114 of 4 0.89None
Adult carcass68 ± 84 of 4 0.50Down
Larval CNS301 ± 104 of 4 2.21Up
Larval Salivary gland116 ± 24 of 4 0.85None
Larval midgut77 ± 74 of 4 0.57Down
Larval tubule129 ± 34 of 4 0.90None
Larval hindgut110 ± 74 of 4 0.81None
Larval fat body261 ± 74 of 4 1.90Up
Larval trachea270 ± 264 of 4 1.98Up
Larval carcass87 ± 34 of 4 0.64Down
S2 cells (growing)152 ± 74 of 4 1.12None
Whole fly136 ± 134 of 4

Looking for FBgn0032193. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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