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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032197 through 18771 annotations produced 1 hits



(CG5694):

Annotation Number : CG5694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032197
Gbrowse : chr2L:10227759-10231689 (-) // 100.0 //
Probeset : 1624330_s_at
Accessions : protein= NP_609360; /// NP_723535;, nucleotide= NM_135516; /// NM_164894;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032197.
BDGP gene expression has embryonic in situ data for CG5694: 4 pix of staining in 1 body parts.
BioGrid reports that CG5694 interacts with CG7745 .
TRiP has 1 RNAi stocks for FBgn0032197 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032197 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain216 ± 44 of 4 0.70Down
Head145 ± 84 of 4 0.50Down
Eye134 ± 44 of 4 0.44Down
Thoracicoabdominal ganglion213 ± 64 of 4 0.70Down
Salivary gland131 ± 64 of 4 0.43Down
Crop178 ± 64 of 4 0.60Down
Midgut115 ± 94 of 4 0.40Down
Tubule162 ± 34 of 4 0.50Down
Hindgut121 ± 44 of 4 0.40Down
Heart125 ± 104 of 4 0.41Down
Fat body112 ± 84 of 4 0.36Down
Ovary693 ± 114 of 4 2.30Up
Testis23 ± 14 of 4 0.10Down
Male accessory glands127 ± 14 of 4 0.40Down
Virgin spermatheca161 ± 74 of 4 0.53Down
Mated spermatheca193 ± 74 of 4 0.63Down
Adult carcass101 ± 64 of 4 0.30Down
Larval CNS313 ± 54 of 4 1.02None
Larval Salivary gland157 ± 54 of 4 0.51Down
Larval midgut113 ± 54 of 4 0.37Down
Larval tubule213 ± 54 of 4 0.70Down
Larval hindgut154 ± 74 of 4 0.50Down
Larval fat body180 ± 174 of 4 0.60Down
Larval trachea202 ± 64 of 4 0.66Down
Larval carcass144 ± 24 of 4 0.47Down
S2 cells (growing)191 ± 84 of 4 0.62Down
Whole fly307 ± 194 of 4

Looking for FBgn0032197. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime