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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032202 through 18771 annotations produced 1 hits



(CG18619):

Annotation Number : CG18619
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032202
Gbrowse : chr2L:10264130-10265229 (+) // 100.0 //
Probeset : 1632515_a_at
Accessions : protein= NP_609363; /// NP_723546; /// NP_723547; /// NP_723548;, nucleotide= NM_135519; /// NM_164903; /// NM_164904; /// NM_164905;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0032202.
BDGP gene expression has embryonic in situ data for CG18619: 11 pix of staining in 6 body parts.
BioGrid reports that CG18619 interacts with CG1968 CG3590 CG4755 CG5280 CG5709 CG6156 CG7952 .
TRiP has 1 RNAi stocks for FBgn0032202 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032202 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain513 114 of 4 1.90Up
Head548 554 of 4 2.00Up
Eye640 394 of 4 2.31Up
Thoracicoabdominal ganglion479 294 of 4 1.70Up
Salivary gland606 584 of 4 2.19Up
Crop512 154 of 4 1.90Up
Midgut363 124 of 4 1.30Up
Tubule1113 654 of 4 4.00Up
Hindgut494 84 of 4 1.80Up
Heart565 154 of 4 2.04Up
Fat body604 474 of 4 2.18Up
Ovary168 54 of 4 0.60Down
Testis41 44 of 4 0.20Down
Male accessory glands624 294 of 4 2.30Up
Virgin spermatheca1021 1414 of 4 3.69Up
Mated spermatheca995 584 of 4 3.60Up
Adult carcass392 254 of 4 1.40Up
Larval CNS397 304 of 4 1.44Up
Larval Salivary gland380 474 of 4 1.38None
Larval midgut465 774 of 4 1.68None
Larval tubule867 264 of 4 3.10Up
Larval hindgut464 414 of 4 1.68Up
Larval fat body465 614 of 4 1.70Up
Larval trachea518 1324 of 4 1.87Up
Larval carcass361 534 of 4 1.31None
S2 cells (growing)384 124 of 4 1.39Up
Whole fly276 284 of 4

Looking for FBgn0032202. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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