FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032208 through 18771 annotations produced 1 hits

(CG5604):

Annotation Number : CG5604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032208
Gbrowse : chr2L:10281942-10292278 (-) // 100.0 //
Probeset : 1634156_at
Accessions : protein= NP_609369;, nucleotide= NM_135525;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // inferre
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005488 // binding // inferred f
FlyMine data for FBgn0032208.
Homophila reports that CG5604 is a close match (1e-15) to human gene HERC2;SHEP1 (NP_004658), a gene associated with [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
VDRC has 1 RNAi stocks for FBgn0032208 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	627 ± 5	4 of 4	2.60	Up
Head	339 ± 22	4 of 4	1.40	Up
Eye	496 ± 14	4 of 4	2.02	Up
Thoracicoabdominal ganglion	636 ± 32	4 of 4	2.60	Up
Salivary gland	418 ± 7	4 of 4	1.70	Up
Crop	364 ± 6	4 of 4	1.50	Up
Midgut	186 ± 3	4 of 4	0.80	Down
Tubule	587 ± 29	4 of 4	2.40	Up
Hindgut	316 ± 5	4 of 4	1.30	Up
Heart	383 ± 12	4 of 4	1.56	Up
Fat body	375 ± 14	4 of 4	1.53	Up
Ovary	607 ± 11	4 of 4	2.50	Up
Testis	499 ± 5	4 of 4	2.00	Up
Male accessory glands	454 ± 14	4 of 4	1.90	Up
Virgin spermatheca	411 ± 19	4 of 4	1.68	Up
Mated spermatheca	387 ± 16	4 of 4	1.58	Up
Adult carcass	319 ± 16	4 of 4	1.30	Up
Larval CNS	478 ± 6	4 of 4	1.95	Up
Larval Salivary gland	604 ± 30	4 of 4	2.46	Up
Larval midgut	208 ± 9	4 of 4	0.85	None
Larval tubule	513 ± 12	4 of 4	2.10	Up
Larval hindgut	433 ± 6	4 of 4	1.77	Up
Larval fat body	309 ± 17	4 of 4	1.30	Up
Larval trachea	394 ± 11	4 of 4	1.61	Up
Larval carcass	368 ± 5	4 of 4	1.50	Up
S2 cells (growing)	345 ± 5	4 of 4	1.41	Up
Whole fly	245 ± 16	4 of 4

Looking for FBgn0032208. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720