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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032209 through 18771 annotations produced 1 hits

Hand (Hand):

Annotation Number : CG18144
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032209
Gbrowse : chr2L:10292780-10295299 (-) // 100.0 //
Probeset : 1633789_at
Accessions : protein= NP_609370;, nucleotide= NM_135526;
Pathway : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0032209.
Homophila reports that CG18144 is a close match (6e-11) to human gene PTF1A (NP_835455), a gene associated with Diabetes mellitus, permanent neonatal, with cerebellar agenesis, 609069 (3).
TRiP has 1 RNAi stocks for FBgn0032209 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032209 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 03 of 4 0.50Down
Head9 11 of 4 0.40Down
Eye1 00 of 4 0.07Down
Thoracicoabdominal ganglion23 14 of 4 1.10None
Salivary gland37 82 of 4 1.75None
Crop8 22 of 4 0.40Down
Midgut148 14 of 4 7.00Up
Tubule41 34 of 4 2.00Up
Hindgut77 24 of 4 3.60Up
Heart5003 1784 of 4235.74Up
Fat body225 1174 of 410.63Up
Ovary1 00 of 4 0.10Down
Testis22 44 of 4 1.10None
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca12 33 of 4 0.59None
Mated spermatheca11 71 of 4 0.54None
Adult carcass259 184 of 412.20Up
Larval CNS39 74 of 4 1.87Up
Larval Salivary gland38 94 of 4 1.81None
Larval midgut104 64 of 4 4.91Up
Larval tubule112 114 of 4 5.30Up
Larval hindgut36 14 of 4 1.71Up
Larval fat body36 44 of 4 1.70Up
Larval trachea69 1232 of 4 3.26None
Larval carcass121 84 of 4 5.72Up
S2 cells (growing)1 00 of 4 0.07Down
Whole fly21 34 of 4

Looking for FBgn0032209. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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