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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032211 through 18771 annotations produced 1 hits


Annotation Number : CG13138
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032211
Gbrowse : chr2L:10300221-10301955 (-) // 100.0 //
Probeset : 1636595_a_at
Accessions : protein= NP_609372; /// NP_723559;, nucleotide= NM_135528; /// NM_164913;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032211.
BioGrid reports that CG13138 interacts with CG7349 CG13138 CG13287 CG13728 CG13840 CG14011 CG15218 CG15231 CG1851 CG3056 CG31090 CG3510 CG5792 CG6569 CG7424 CG7757 CG7966 CG8276 CG8280 CG8361 CG8404 CG33197 .
VDRC has 1 RNAi stocks for FBgn0032211 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 0.50None
Head4 11 of 4 0.40Down
Eye2 10 of 4 0.21Down
Thoracicoabdominal ganglion5 11 of 4 0.50Down
Salivary gland10 10 of 4 0.93None
Crop9 00 of 4 0.90None
Midgut5 10 of 4 0.50None
Tubule4 00 of 4 0.40Down
Hindgut5 11 of 4 0.50Down
Heart1 10 of 4 0.17Down
Fat body11 23 of 4 1.09None
Ovary21 14 of 4 2.00Up
Testis12 24 of 4 1.10None
Male accessory glands7 00 of 4 0.60None
Virgin spermatheca9 12 of 4 0.89None
Mated spermatheca8 14 of 4 0.81None
Adult carcass8 10 of 4 0.80None
Larval CNS5 14 of 4 0.46Down
Larval Salivary gland11 14 of 4 1.06None
Larval midgut6 10 of 4 0.62None
Larval tubule8 12 of 4 0.80None
Larval hindgut8 01 of 4 0.76None
Larval fat body2 10 of 4 0.20Down
Larval trachea3 10 of 4 0.34Down
Larval carcass7 20 of 4 0.70None
S2 cells (growing)2 00 of 4 0.25Down
Whole fly11 14 of 4

Looking for FBgn0032211. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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