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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032213 through 18771 annotations produced 1 hits



(CG5390):

Annotation Number : CG5390
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032213
Gbrowse : chr2L:10304068-10306594 (-) // 99.57 //
Probeset : 1636900_at
Accessions : protein= NP_609374;, nucleotide= NM_135530;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0032213.
Homophila reports that CG5390 is a close match (2e-12) to human gene ADN;CFD (NP_001919), a gene associated with Complement factor D deficiency (3).
BioGrid reports that CG5390 interacts with CG8464 CG8697 .
VDRC has 2 RNAi stocks for FBgn0032213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 64 of 4 0.80Down
Head1220 934 of 4 5.10Up
Eye785 564 of 4 3.29Up
Thoracicoabdominal ganglion213 54 of 4 0.90None
Salivary gland75 84 of 4 0.32Down
Crop623 134 of 4 2.60Up
Midgut23 31 of 4 0.10Down
Tubule22 32 of 4 0.10Down
Hindgut932 314 of 4 3.90Up
Heart594 614 of 4 2.49Up
Fat body691 834 of 4 2.90Up
Ovary25 14 of 4 0.10Down
Testis64 24 of 4 0.30Down
Male accessory glands14 40 of 4 0.10Down
Virgin spermatheca1011 334 of 4 4.24Up
Mated spermatheca439 444 of 4 1.84Up
Adult carcass1103 64 of 4 4.60Up
Larval CNS264 454 of 4 1.11None
Larval Salivary gland117 114 of 4 0.49Down
Larval midgut39 53 of 4 0.16Down
Larval tubule30 24 of 4 0.10Down
Larval hindgut610 184 of 4 2.56Up
Larval fat body2502 2884 of 410.50Up
Larval trachea1175 1134 of 4 4.93Up
Larval carcass718 254 of 4 3.01Up
S2 cells (growing)1372 54 of 4 5.76Up
Whole fly238 144 of 4

Looking for FBgn0032213. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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