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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032214 through 18771 annotations produced 1 hits



(CG4968):

Annotation Number : CG4968
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032214
Gbrowse : chr2L:10306902-10308050 (+) // 100.0 //
Probeset : 1640358_at
Accessions : protein= NP_609375;, nucleotide= NM_135531;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from elec
FlyMine data for FBgn0032214.
BDGP gene expression has embryonic in situ data for CG4968: 13 pix of staining in 7 body parts.
TRiP has 1 RNAi stocks for FBgn0032214 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032214 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain251 ± 74 of 4 0.70Down
Head174 ± 94 of 4 0.50Down
Eye273 ± 74 of 4 0.73Down
Thoracicoabdominal ganglion238 ± 124 of 4 0.60Down
Salivary gland186 ± 124 of 4 0.50Down
Crop238 ± 154 of 4 0.60Down
Midgut162 ± 24 of 4 0.40Down
Tubule126 ± 24 of 4 0.30Down
Hindgut177 ± 64 of 4 0.50Down
Heart269 ± 124 of 4 0.72Down
Fat body252 ± 304 of 4 0.67Down
Ovary674 ± 74 of 4 1.80Up
Testis981 ± 204 of 4 2.60Up
Male accessory glands291 ± 74 of 4 0.80Down
Virgin spermatheca218 ± 64 of 4 0.58Down
Mated spermatheca203 ± 74 of 4 0.54Down
Adult carcass208 ± 94 of 4 0.60Down
Larval CNS420 ± 244 of 4 1.12None
Larval Salivary gland287 ± 104 of 4 0.76Down
Larval midgut219 ± 124 of 4 0.58Down
Larval tubule298 ± 154 of 4 0.80Down
Larval hindgut259 ± 104 of 4 0.69Down
Larval fat body409 ± 614 of 4 1.10None
Larval trachea379 ± 254 of 4 1.01None
Larval carcass271 ± 174 of 4 0.72Down
S2 cells (growing)270 ± 84 of 4 0.72Down
Whole fly376 ± 174 of 4

Looking for FBgn0032214. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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