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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032216 through 18771 annotations produced 1 hits



(CG5384):

Annotation Number : CG5384
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032216
Gbrowse : chr2L:10312315-10314396 (-) // 100.0 //
Probeset : 1631050_at
Accessions : protein= NP_609377;, nucleotide= NM_135533;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity //
FlyMine data for FBgn0032216.
VDRC has 3 RNAi stocks for FBgn0032216 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain298 ± 54 of 4 0.40Down
Head305 ± 154 of 4 0.40Down
Eye251 ± 24 of 4 0.36Down
Thoracicoabdominal ganglion322 ± 84 of 4 0.50Down
Salivary gland485 ± 224 of 4 0.69Down
Crop516 ± 24 of 4 0.70Down
Midgut549 ± 154 of 4 0.80Down
Tubule846 ± 434 of 4 1.20Up
Hindgut399 ± 44 of 4 0.60Down
Heart1069 ± 414 of 4 1.52Up
Fat body949 ± 424 of 4 1.35Up
Ovary1056 ± 154 of 4 1.50Up
Testis614 ± 224 of 4 0.90None
Male accessory glands452 ± 134 of 4 0.60Down
Virgin spermatheca381 ± 44 of 4 0.54Down
Mated spermatheca367 ± 194 of 4 0.52Down
Adult carcass687 ± 234 of 4 1.00None
Larval CNS762 ± 384 of 4 1.08None
Larval Salivary gland1238 ± 614 of 4 1.76Up
Larval midgut1003 ± 564 of 4 1.43Up
Larval tubule1897 ± 414 of 4 2.70Up
Larval hindgut873 ± 534 of 4 1.24Up
Larval fat body896 ± 544 of 4 1.30Up
Larval trachea724 ± 634 of 4 1.03None
Larval carcass1644 ± 1684 of 4 2.34Up
S2 cells (growing)755 ± 214 of 4 1.07None
Whole fly703 ± 314 of 4

Looking for FBgn0032216. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime