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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032218 through 18771 annotations produced 1 hits



(CG5381):

Annotation Number : CG5381
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032218
Gbrowse : chr2L:10317493-10320054 (-) // 98.92 //
Probeset : 1622990_at
Accessions : protein= NP_609379;, nucleotide= NM_135535;
FlyMine data for FBgn0032218.
BDGP gene expression has embryonic in situ data for CG5381: 13 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0032218 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 24 of 4 0.20Down
Head257 ± 184 of 4 1.30Up
Eye87 ± 84 of 4 0.44Down
Thoracicoabdominal ganglion74 ± 44 of 4 0.40Down
Salivary gland245 ± 154 of 4 1.23None
Crop1331 ± 284 of 4 6.60Up
Midgut370 ± 144 of 4 1.90Up
Tubule1161 ± 604 of 4 5.80Up
Hindgut836 ± 184 of 4 4.20Up
Heart631 ± 74 of 4 3.15Up
Fat body753 ± 764 of 4 3.76Up
Ovary35 ± 34 of 4 0.20Down
Testis89 ± 74 of 4 0.40Down
Male accessory glands213 ± 104 of 4 1.10None
Virgin spermatheca1105 ± 304 of 4 5.52Up
Mated spermatheca1188 ± 144 of 4 5.93Up
Adult carcass648 ± 194 of 4 3.20Up
Larval CNS29 ± 63 of 4 0.15Down
Larval Salivary gland404 ± 124 of 4 2.02Up
Larval midgut381 ± 214 of 4 1.90Up
Larval tubule397 ± 124 of 4 2.00Up
Larval hindgut624 ± 244 of 4 3.12Up
Larval fat body83 ± 34 of 4 0.40Down
Larval trachea333 ± 484 of 4 1.67Up
Larval carcass529 ± 244 of 4 2.64Up
S2 cells (growing)62 ± 44 of 4 0.31Down
Whole fly200 ± 64 of 4

Looking for FBgn0032218. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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