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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032219 through 18771 annotations produced 1 hits



(CG4995):

Annotation Number : CG4995
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032219
Gbrowse : chr2L:10322475-10324993 (+) // 100.0 //
Probeset : 1627658_s_at
Accessions : protein= NP_609380; /// NP_723564; /// NP_723565;, nucleotide= NM_135536; /// NM_164914; /// NM_164915;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0032219.
BDGP gene expression has embryonic in situ data for CG4995: 4 pix of staining in 1 body parts.
Homophila reports that CG4995 is a close match (7e-12) to human gene ANT1;PEO3;SLC25A4;T1 (NP_001142), a gene associated with Progressive external ophthalmoplegia with mitochondrial DNA deletions, 157640 (3).
VDRC has 1 RNAi stocks for FBgn0032219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland1 00 of 4 0.01Down
Crop3 10 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule4 10 of 4 0.00Down
Hindgut16 31 of 4 0.10Down
Heart170 204 of 4 1.10None
Fat body380 404 of 4 2.47Up
Ovary2 00 of 4 0.00Down
Testis1426 514 of 4 9.30Up
Male accessory glands5 20 of 4 0.00Down
Virgin spermatheca417 204 of 4 2.70Up
Mated spermatheca416 324 of 4 2.70Up
Adult carcass139 134 of 4 0.90None
Larval CNS2 10 of 4 0.02Down
Larval Salivary gland14 32 of 4 0.10Down
Larval midgut5 20 of 4 0.04Down
Larval tubule9 20 of 4 0.10Down
Larval hindgut8 00 of 4 0.05Down
Larval fat body395 524 of 4 2.60Up
Larval trachea14 112 of 4 0.09Down
Larval carcass2 00 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly154 74 of 4

Looking for FBgn0032219. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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