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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032223 through 18771 annotations produced 1 hits



GATAd (GATAd):

Annotation Number : CG5034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032223
Gbrowse : chr2L:10333913-10338456 (+) // 100.0 //
Probeset : 1626899_at
Accessions : protein= NP_609383;, nucleotide= NM_135539;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0032223.
Homophila reports that CG5034 is a close match (1e-11) to human gene GATA3;HDR (NP_002042), a gene associated with Hypoparathyroidism, sensorineural deafness, and renal dysplasia, 146255 (3).
TRiP has 3 RNAi stocks for FBgn0032223 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032223 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain227 ± 114 of 4 2.00Up
Head80 ± 44 of 4 0.70Down
Eye139 ± 94 of 4 1.22None
Thoracicoabdominal ganglion257 ± 194 of 4 2.30Up
Salivary gland75 ± 84 of 4 0.66Down
Crop135 ± 24 of 4 1.20Up
Midgut57 ± 14 of 4 0.50Down
Tubule88 ± 134 of 4 0.80None
Hindgut93 ± 34 of 4 0.80Down
Heart94 ± 54 of 4 0.83Down
Fat body55 ± 74 of 4 0.48Down
Ovary251 ± 44 of 4 2.20Up
Testis130 ± 34 of 4 1.10Up
Male accessory glands39 ± 14 of 4 0.30Down
Virgin spermatheca51 ± 24 of 4 0.45Down
Mated spermatheca68 ± 74 of 4 0.60Down
Adult carcass72 ± 94 of 4 0.60Down
Larval CNS136 ± 124 of 4 1.20Up
Larval Salivary gland94 ± 34 of 4 0.83Down
Larval midgut39 ± 34 of 4 0.35Down
Larval tubule92 ± 44 of 4 0.80Down
Larval hindgut85 ± 44 of 4 0.75Down
Larval fat body67 ± 64 of 4 0.60Down
Larval trachea122 ± 64 of 4 1.07None
Larval carcass63 ± 14 of 4 0.55Down
S2 cells (growing)151 ± 74 of 4 1.33Up
Whole fly114 ± 24 of 4

Looking for FBgn0032223. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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