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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032234 through 18771 annotations produced 3 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:10380117-10382865 (+) // 100.0 //):

Annotation Number : CG5091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1623305_at
Accessions : protein= EC:2.4.1.-, nucleotide=
Interpro : 0006487 // protein N-linked glycosylation // inferred from sequence or structural similarity
Homophila reports that CG5091 is a close match (6e-22) to human gene ALG8 (NP_001007028), a gene associated with Congenital disorder of glycosylation, type Ih, 608104 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 13 of 4 1.10None
Head6 23 of 4 0.80None
Eye2 11 of 4 0.34Down
Thoracicoabdominal ganglion6 01 of 4 0.80None
Salivary gland12 20 of 4 1.49None
Crop5 02 of 4 0.60Down
Midgut20 24 of 4 2.50Up
Tubule7 02 of 4 1.00None
Hindgut5 02 of 4 0.70None
Heart5 02 of 4 0.65None
Fat body11 14 of 4 1.46Up
Ovary12 14 of 4 1.50None
Testis3 01 of 4 0.50Down
Male accessory glands6 12 of 4 0.80None
Virgin spermatheca11 13 of 4 1.38None
Mated spermatheca10 22 of 4 1.27None
Adult carcass6 21 of 4 0.80None
Larval CNS17 64 of 4 2.17None
Larval Salivary gland9 03 of 4 1.21None
Larval midgut8 13 of 4 0.98None
Larval tubule6 12 of 4 0.70None
Larval hindgut6 13 of 4 0.73None
Larval fat body4 10 of 4 0.50None
Larval trachea3 00 of 4 0.42Down
Larval carcass2 00 of 4 0.27Down
S2 cells (growing)4 01 of 4 0.57Down
Whole fly8 14 of 4



March 2006 (FlyBase/BDGP 5.3) (chr2L:10380117-10382865 (+) // 100.0 //):

Annotation Number : CG5091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1636630_s_at
Accessions : protein= EC:2.4.1.-, nucleotide=
Interpro : 0006487 // protein N-linked glycosylation // inferred from sequence or structural similarity
Homophila reports that CG5091 is a close match (6e-22) to human gene ALG8 (NP_001007028), a gene associated with Congenital disorder of glycosylation, type Ih, 608104 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 04 of 4 0.20Down
Head9 23 of 4 0.10Down
Eye16 14 of 4 0.26Down
Thoracicoabdominal ganglion17 24 of 4 0.30Down
Salivary gland29 43 of 4 0.47None
Crop10 03 of 4 0.20Down
Midgut1128 424 of 417.70Up
Tubule17 13 of 4 0.30Down
Hindgut234 124 of 4 3.70Up
Heart13 14 of 4 0.21Down
Fat body20 34 of 4 0.31Down
Ovary24 14 of 4 0.40None
Testis1 00 of 4 0.00Down
Male accessory glands16 24 of 4 0.30Down
Virgin spermatheca26 44 of 4 0.42None
Mated spermatheca25 34 of 4 0.40None
Adult carcass7 41 of 4 0.10Down
Larval CNS34 34 of 4 0.54None
Larval Salivary gland18 13 of 4 0.29Down
Larval midgut573 464 of 4 8.98Up
Larval tubule242 54 of 4 3.80Up
Larval hindgut159 84 of 4 2.50Up
Larval fat body11 21 of 4 0.20Down
Larval trachea13 24 of 4 0.22Down
Larval carcass7 21 of 4 0.11Down
S2 cells (growing)21 14 of 4 0.34Down
Whole fly63 134 of 4



/// (CG5091 /// CG5096):

Annotation Number : CG5096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032235
Gbrowse : chr2L:10382252-10384730 (+) // 100.0 //
Probeset : 1639478_at
Accessions : protein= NP_001097141; /// NP_723576;, nucleotide= NM_001103671; /// NM_164918;
Pathway : 0005783 // endoplasmic reticulum // inferred from sequence similarity /// 0005789 // endoplasmic reticulum membrane // i
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0032235.
Homophila reports that CG5096 is a close match (1e-13) to human gene ALS;IGFALS (NP_004961), a gene associated with Acid-labile subunit, deficiency of (3).
BioGrid reports that CG5096 interacts with CG7810 .
VDRC has 6 RNAi stocks for FBgn0032235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 12 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye4 11 of 4 0.02Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland6 30 of 4 0.02Down
Crop3 10 of 4 0.00Down
Midgut2790 804 of 4 8.80Up
Tubule1517 184 of 4 4.80Up
Hindgut907 164 of 4 2.90Up
Heart4 21 of 4 0.01Down
Fat body4 61 of 4 0.01Down
Ovary7 03 of 4 0.00Down
Testis2 00 of 4 0.00Down
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca7 01 of 4 0.02Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass3 10 of 4 0.00Down
Larval CNS2 10 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut3040 1744 of 4 9.63Up
Larval tubule942 144 of 4 3.00Up
Larval hindgut875 824 of 4 2.77Up
Larval fat body2 00 of 4 0.00Down
Larval trachea4 30 of 4 0.01Down
Larval carcass0 00 of 4 0.00Down
S2 cells (growing)11 04 of 4 0.04Down
Whole fly315 334 of 4

Looking for FBgn0032234. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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