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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032236 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S7 (mRpS7):

Annotation Number : CG5108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032236
Gbrowse : chr2L:10386663-10387524 (+) // 100.0 //
Probeset : 1641278_at
Accessions : protein= NP_523537;, nucleotide= NM_078813;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003735 // structural constituent of ribos
FlyMine data for FBgn0032236.
VDRC has 2 RNAi stocks for FBgn0032236 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain310 ± 84 of 4 0.80Down
Head302 ± 94 of 4 0.80Down
Eye254 ± 64 of 4 0.64Down
Thoracicoabdominal ganglion409 ± 264 of 4 1.00None
Salivary gland408 ± 154 of 4 1.03None
Crop402 ± 104 of 4 1.00None
Midgut298 ± 114 of 4 0.80Down
Tubule394 ± 24 of 4 1.00None
Hindgut399 ± 54 of 4 1.00None
Heart383 ± 104 of 4 0.97None
Fat body271 ± 404 of 4 0.69Down
Ovary626 ± 104 of 4 1.60Up
Testis259 ± 34 of 4 0.70Down
Male accessory glands360 ± 134 of 4 0.90None
Virgin spermatheca350 ± 124 of 4 0.89Down
Mated spermatheca364 ± 214 of 4 0.92None
Adult carcass397 ± 114 of 4 1.00None
Larval CNS397 ± 264 of 4 1.01None
Larval Salivary gland533 ± 184 of 4 1.35Up
Larval midgut326 ± 234 of 4 0.82None
Larval tubule244 ± 54 of 4 0.60Down
Larval hindgut422 ± 274 of 4 1.07None
Larval fat body254 ± 44 of 4 0.60Down
Larval trachea470 ± 364 of 4 1.19Up
Larval carcass313 ± 254 of 4 0.79Down
S2 cells (growing)356 ± 74 of 4 0.90Down
Whole fly395 ± 114 of 4

Looking for FBgn0032236. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime