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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032242 through 18771 annotations produced 1 hits



(CG5355):

Annotation Number : CG5355
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032242
Gbrowse : chr2L:10410528-10413572 (-) // 100.0 //
Probeset : 1633718_at
Accessions : protein= NP_609397;, nucleotide= NM_135553;
Interpro : 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004252 // serine-t
FlyMine data for FBgn0032242.
BioGrid reports that CG5355 interacts with CG6829 CG5709 .
VDRC has 2 RNAi stocks for FBgn0032242 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 ± 54 of 4 0.40Down
Head142 ± 44 of 4 0.50Down
Eye75 ± 54 of 4 0.27Down
Thoracicoabdominal ganglion133 ± 44 of 4 0.50Down
Salivary gland363 ± 244 of 4 1.32Up
Crop201 ± 84 of 4 0.70Down
Midgut344 ± 14 of 4 1.30Up
Tubule697 ± 104 of 4 2.50Up
Hindgut246 ± 34 of 4 0.90Down
Heart156 ± 134 of 4 0.57Down
Fat body233 ± 344 of 4 0.85None
Ovary343 ± 44 of 4 1.20Up
Testis306 ± 164 of 4 1.10None
Male accessory glands243 ± 134 of 4 0.90None
Virgin spermatheca301 ± 184 of 4 1.10None
Mated spermatheca270 ± 174 of 4 0.98None
Adult carcass166 ± 64 of 4 0.60Down
Larval CNS371 ± 354 of 4 1.35Up
Larval Salivary gland740 ± 514 of 4 2.69Up
Larval midgut188 ± 54 of 4 0.69Down
Larval tubule421 ± 144 of 4 1.50Up
Larval hindgut336 ± 54 of 4 1.22Up
Larval fat body292 ± 104 of 4 1.10None
Larval trachea244 ± 554 of 4 0.89None
Larval carcass368 ± 174 of 4 1.34Up
S2 cells (growing)393 ± 154 of 4 1.43Up
Whole fly275 ± 74 of 4

Looking for FBgn0032242. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime