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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032247 through 18771 annotations produced 1 hits



(CG5188):

Annotation Number : CG5188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032247
Gbrowse : chr2L:10428832-10429989 (+) // 100.0 //
Probeset : 1624592_at
Accessions : protein= NP_609401;, nucleotide= NM_135557;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0032247.
VDRC has 3 RNAi stocks for FBgn0032247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 34 of 4 1.10None
Head60 34 of 4 1.20None
Eye46 44 of 4 0.89None
Thoracicoabdominal ganglion72 14 of 4 1.40Up
Salivary gland49 24 of 4 0.95None
Crop126 64 of 4 2.40Up
Midgut41 44 of 4 0.80None
Tubule66 14 of 4 1.30Up
Hindgut49 24 of 4 0.90None
Heart71 64 of 4 1.38Up
Fat body68 114 of 4 1.33None
Ovary74 34 of 4 1.40Up
Testis41 24 of 4 0.80Down
Male accessory glands49 64 of 4 0.90None
Virgin spermatheca122 34 of 4 2.35Up
Mated spermatheca138 64 of 4 2.67Up
Adult carcass69 74 of 4 1.30None
Larval CNS76 64 of 4 1.48Up
Larval Salivary gland90 84 of 4 1.74Up
Larval midgut34 34 of 4 0.66Down
Larval tubule46 14 of 4 0.90Down
Larval hindgut57 34 of 4 1.10None
Larval fat body76 84 of 4 1.50None
Larval trachea86 194 of 4 1.66Up
Larval carcass54 44 of 4 1.04None
S2 cells (growing)71 34 of 4 1.37Up
Whole fly52 14 of 4

Looking for FBgn0032247. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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