FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032248 through 18771 annotations produced 1 hits

(CG5343):

Annotation Number : CG5343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032248
Gbrowse : chr2L:10429919-10430914 (-) // 100.0 //
Probeset : 1632413_at
Accessions : protein= NP_609402;, nucleotide= NM_135558;
Pathway : via spliceosome // inferred by curator /// 0007517 // muscle organ development // inferred from mutant phenotype /// 00
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0071011 // precatalytic spliceosome // inferre
FlyMine data for FBgn0032248.
BDGP gene expression has embryonic in situ data for CG5343: 30 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0032248 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032248 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	164 ± 4	4 of 4	0.70	Down
Head	122 ± 2	4 of 4	0.50	Down
Eye	143 ± 8	4 of 4	0.57	Down
Thoracicoabdominal ganglion	159 ± 7	4 of 4	0.60	Down
Salivary gland	299 ± 13	4 of 4	1.19	Up
Crop	132 ± 5	4 of 4	0.50	Down
Midgut	74 ± 4	4 of 4	0.30	Down
Tubule	119 ± 5	4 of 4	0.50	Down
Hindgut	75 ± 2	4 of 4	0.30	Down
Heart	78 ± 4	4 of 4	0.31	Down
Fat body	58 ± 3	4 of 4	0.23	Down
Ovary	229 ± 7	4 of 4	0.90	Down
Testis	1418 ± 31	4 of 4	5.60	Up
Male accessory glands	142 ± 2	4 of 4	0.60	Down
Virgin spermatheca	101 ± 1	4 of 4	0.40	Down
Mated spermatheca	106 ± 5	4 of 4	0.42	Down
Adult carcass	95 ± 5	4 of 4	0.40	Down
Larval CNS	350 ± 13	4 of 4	1.39	Up
Larval Salivary gland	184 ± 3	4 of 4	0.73	Down
Larval midgut	83 ± 4	4 of 4	0.33	Down
Larval tubule	63 ± 1	4 of 4	0.30	Down
Larval hindgut	85 ± 3	4 of 4	0.34	Down
Larval fat body	190 ± 53	4 of 4	0.80	None
Larval trachea	155 ± 8	4 of 4	0.61	Down
Larval carcass	102 ± 5	4 of 4	0.41	Down
S2 cells (growing)	137 ± 7	4 of 4	0.55	Down
Whole fly	252 ± 4	4 of 4

Looking for FBgn0032248. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720