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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032256 through 18771 annotations produced 1 hits



RluA-2 (RluA-2):

Annotation Number : CG6187
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032256
Gbrowse : chr2L:10477113-10482983 (+) // 100.0 //
Probeset : 1632649_at
Accessions : protein= NP_609411;, nucleotide= NM_135567;
Interpro : "0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferre
FlyMine data for FBgn0032256.
BDGP gene expression has embryonic in situ data for CG6187: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0032256 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 14 of 4 2.00Up
Head35 34 of 4 0.70Down
Eye34 14 of 4 0.66Down
Thoracicoabdominal ganglion99 74 of 4 1.90Up
Salivary gland73 24 of 4 1.39Up
Crop46 24 of 4 0.90None
Midgut35 24 of 4 0.70Down
Tubule88 54 of 4 1.70Up
Hindgut33 44 of 4 0.60Down
Heart30 14 of 4 0.57Down
Fat body53 94 of 4 1.02None
Ovary128 34 of 4 2.50Up
Testis11 04 of 4 0.20Down
Male accessory glands66 74 of 4 1.30None
Virgin spermatheca69 24 of 4 1.33Up
Mated spermatheca90 74 of 4 1.72Up
Adult carcass36 23 of 4 0.70Down
Larval CNS111 94 of 4 2.13Up
Larval Salivary gland45 54 of 4 0.87None
Larval midgut25 04 of 4 0.48Down
Larval tubule25 14 of 4 0.50Down
Larval hindgut32 14 of 4 0.61Down
Larval fat body20 34 of 4 0.40Down
Larval trachea58 54 of 4 1.12None
Larval carcass43 64 of 4 0.83None
S2 cells (growing)52 14 of 4 1.00None
Whole fly52 44 of 4

Looking for FBgn0032256. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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